Make workspace IDs opaque, independent of the filesystem path (#1503)

* Make workspace IDs opaque, independent of the filesystem path

Workspace IDs were the resolved checkout/worktree path, so code could
treat an ID as a path: prefix matching, deriving directories from it,
falling back to a path when a lookup missed. IDs are now opaque -
compared only by exact equality and never used as a path. Anything
path-shaped resolves the workspace record first and reads its cwd.

New workspaces get a generated `wks_` ID; existing path-shaped IDs are
read from disk and never regenerated, so there is no migration and no
change to the wire or persisted schemas. Groundwork for running
multiple workspaces in a single directory.

* Keep attachment scope key stable and align refetch test

The attachment scope key keeps `workspace=` instead of `wsid=` so existing
persisted drafts are not orphaned; the rename was cosmetic. The SDK refetch
test no longer asserts a filter, matching refetch fetching one page and
selecting by id client-side.

* Fix live agent updates in directories without a registered workspace

The opaque-ID work removed buildProjectPlacementForCwd's directory
fallback, so an agent running in a folder with no registered workspace
(e.g. a fresh non-git dir) produced a null placement. forwardAgentUpdate
then threw "Workspace not found", the error was swallowed by its catch,
and no agent_update was emitted — live model/thinking switches and status
updates silently stopped. Caught by the live-preferences e2e suite.

The fallback builds a directory-scoped project placement keyed by the
path. That key is a project grouping key (non-git projects group by
path), not a workspace id, so it stays within the opaque-id rule.

* Always run server worktree archive, even without a resolved workspace

Archiving bailed out entirely when the workspace was not found in the
client store, so a race or stale state could make "archive" do nothing
server-side with only a console.warn. The server archive is keyed by
worktreePath, which is always available, so it now runs regardless; only
the optimistic client-side updates (keyed by workspace id) are gated on
the workspace being resolved.

* Expect a directory-scoped placement for unregistered agent dirs

This unit test asserted the no-placement behavior reverted in the live
agent-update fix, which had broken live model/thinking switching. Update
it to expect the directory-scoped placement now emitted for an agent in a
directory with no registered workspace.

* Fix opaque workspace routing in app E2E

* Preserve workspace IDs during partial bootstrap

* Fix archive flows for opaque workspace IDs

* Stop treating opaque workspace IDs as filesystem paths

Workspace IDs are opaque (wks_<hex>), but several call sites still passed
the id where a directory was expected, which broke those flows for opaque
IDs. The branch switcher sent the id as a cwd to branch/stash/checkout git
operations, and server archive/reconcile cleanup keyed git-watch and
subscription teardown by id, leaking that state.

Git and filesystem operations now take the workspace directory; the opaque
id is used only for identity and cache keys. Archive/reconcile cleanup
routes through a single teardownArchivedWorkspace helper that keeps the key
split explicit: runtime store by id, git watch and subscription by cwd.
Path-derived grouping keys are renamed to directory keys, and the helpers
are split into workspace-identity and workspace-directory so the id-vs-path
boundary is obvious.

docs/glossary.md

@@ -3,7 +3,7 @@
 Authoritative terminology. UI label wins. Don't invent synonyms; use what's here.
 
 - **Project** — Logical grouping of workspaces sharing a git remote (or main repo root). UI: "Project" / "Add project". Code: `ProjectSummary` (`packages/app/src/utils/projects.ts:22`), `projectKey` (`packages/server/src/server/workspace-registry-model.ts:16`). Forbidden: "Repo", "Repository" as UI label.
-- **Workspace** — One concrete `cwd` on one daemon, with git state; belongs to exactly one project. UI: "Workspace". Code: `WorkspaceDescriptorPayload` (`packages/protocol/src/messages.ts:2178`). Don't confuse with: Branch (one branch can back many workspaces via worktrees). Forbidden: "Folder", "Directory" as UI label.
+- **Workspace** — One concrete `cwd` on one daemon, with git state; belongs to exactly one project. Its `id` is opaque workspace identity; its `cwd` is the filesystem directory. UI: "Workspace". Code: `WorkspaceDescriptorPayload` (`packages/protocol/src/messages.ts:2178`). Don't confuse with: Branch (one branch can back many workspaces via worktrees). Forbidden: "Folder", "Directory" as UI label.
 - **Workspace kind** — `"directory" | "local_checkout" | "worktree"`. Code: `PersistedWorkspaceKind` (`packages/server/src/server/workspace-registry-model.ts:8`).
 - **Agent** — See **Agent session**. UI still says "Agent" / "New Agent" in places, but moving toward **Agent session** as the canonical term. Code: `AgentSnapshotPayload` (`packages/protocol/src/messages.ts:608`). Forbidden: "Task", "Job", "Run".
 - **Daemon** — Local Paseo server process; identified by `serverId`. UI: "Daemon" (system contexts only). Code: `serverId` in `ServerInfoStatusPayloadSchema` (`packages/protocol/src/messages.ts:1936`), `DaemonClient` (`packages/client/src/daemon-client.ts`).